Tree shape uploaded on iTOL is different from trees constructed by another tools.

Question

[grandlee]

Hi, I'd like to view phylogenetic tree using iTOL, but tree shape is different from trees drawn using other tools.

I converted dendrogram to newick using write.dendrogram implemented in phylogram R package.

write.dendrogram(tdend, file="/path/to/dend.newick")

I upleaded dend.newick on iTOL and MEGA, and I also drew tree on R.

Trees drawn using MEGA and R were same, but tree drawn using iTOL was different from that.

Is there any advices?

Thanks,

[Asaf]

Different in what manner? Maybe rooting is different?

Answer 1

[Michael]

Why do I have different tree topologies when using different tree viewers, such as itol, Figtree?