Entering edit mode
2.5 years ago
isha.lily20
▴
10
Hello
Can anybody tell me how to extract promoter coordinates from transcriptome.gtf file generated after cuffmerge result,
file only contains exon, or
is there any direct tool available ?
I am showing first 2 lines of my GTF file obtained after cuffmerge contain only exon
Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Chr8 Chr9 Chr10 Chr11 Chr12 Chr13 Chr14 Chr15 Chr16 Chr17 Chr18 CUFF.1.2 tss_id TSS1
Chr1 Cufflinks exon 3354 3616 . + . gene_id XLOC_000001 transcript_id TCONS_00000002 exon_number 2 oId CUFF.1.2 tss_id TSS1
Thank you