Encode Chip-seq data selection questions

Question

[Tonkatsu]

Hi there, I am looking at the Encode chip-seq files for a transcription factor i am interested in and am hoping to associate the binding regions to differentially expressed genes generated from rna-seq data.

I was just wondering which of these files I should look at to do so? Should I be looking at ones with isogenic replicates 1,2 (does this mean that the replicates are merged in these files?)?

Also does anyone have any tools that would allow me associate the significant binding regions to my genelists?

https://www.encodeproject.org/experiments/ENCSR000EGJ/

Thanks!