Question

data set download from NCBI Datasets

1

Entering edit mode

2.5 years ago

beginner123 ▴ 30

Hi all, I have a question. When I download multiple files from NCBI Datasets at once as a zip file, I have to rename them manually because they all have the same name (e.g. protein.faa). Is there any good solution to this problem?

NCBI Datasets Sequences • 937 views

ADD COMMENT • link updated 2.5 years ago by iraun 6.2k • written 2.5 years ago by beginner123 ▴ 30

0

Entering edit mode

Does the parent folder (of protein.faa) have a different name? If so, you could use that name to rename protein.faa.

ADD REPLY • link 2.5 years ago by iraun 6.2k

0

Entering edit mode

Thank you for your answer. I have successfully renamed protein.faa using the parent folder name with FlexibleRenamer tool.

ADD REPLY • link 2.5 years ago by beginner123 ▴ 30

0

Entering edit mode

Exactly. Good you figured it out 👍.

ADD REPLY • link 2.5 years ago by iraun 6.2k

score 1 · Answer 1 · 2022-06-02

1

Entering edit mode

2.5 years ago

GenoMax 147k

For those reaching this thread by search in future there is an answer to rename the protein.faa files here --> NCBI datasets bulk protein fasta download

ADD COMMENT • link 2.5 years ago by GenoMax 147k