Entering edit mode
2.5 years ago
schulpen_91
▴
30
I have used Augustus annotator on 20 related species + 1 fully annotated transcriptome from NCBI. The transcriptome fasta from NCBI shows the name of every protein sequence, such as '>AAW40618.2 calcium-binding protein'. For my own species the fasta files only give me names like '>contig_10.g32'.
Why is that? Why are my species' proteins only referred to by contig name and position?
While running the tool, the terminal output clearly DID show names for every protein it recognized.
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EDIT: I think... I understand the problem. Augustus is a structural annotator, and I need a functional annotator like Interproscan.
