Clustering GO

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2.5 years ago

Laura.civolani • 0

Hi everyone! I have a list of Arabidopsis proteins and I am trying to cluster the GO.

I have tried using David, but some genes are not recognised properly and left out the clustering. I really like the options of "5 levels" of clustering, it is definitely what I am looking for. I have tried using Panther, but it is not able to give me the different levels of clustering as I can find in David. In this case I have no problems with genes not characterised.

Have you got any suggestions on software? Tutorials I can look for?

Thank you,

Laura

GO clustering • 470 views

ADD COMMENT • link updated 2.5 years ago by LauferVA 4.5k • written 2.5 years ago by Laura.civolani • 0

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I have tried using David, but some genes are not recognised properly and left out the clustering.

I am not saying that will definitely be the case, but depending on the reason they are left out, it might be the fastest way to answer your Q.

ADD REPLY • link 2.5 years ago by LauferVA 4.5k

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