Error in createArrowFiles ArchR Analysis
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2.6 years ago

So I'm currently using ArchR for a scATAC-seq analysis, however once I enter my files (i.e. fragment1.tsv.gz, fragment2.tsv.gz, etc.) as the inputFiles, I receive the error after entering the command:

ArrowFiles <- createArrowFiles(
  inputFiles = inputFiles,
  sampleNames = names(inputFiles),
  minTSS = 4,
  minFrags = 1000, 
  addTileMat = TRUE,
  force = FALSE,
  addGeneScoreMat = TRUE
  )

1. In sprintf"%s Reading TabixFile %s Percent", prefix, round(100 * one argument not used by format ' %s Reading TabixFile %s Percent'

. . .

10. In sprintf"%s Reading TabixFile %s Percent", prefix, round(100 * one argument not used by format ' %s Reading TabixFile %s Percent'

I've stayed up hours converting to .tsv and back to .tsv.gz hoping that may alleviate the issue. Nothing.

snatac-seq archr scatac-seq archrgenome atac-seq • 834 views
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