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2.4 years ago
Liam
•
0
May I know if there's a command that could automatically label each specific group's name? It's somewhat hard to differentiate the colours and labeling them manually. Thank you in advance.
Hi, Rima. Thank you for replying. I'm actually referring to the group label as shown in the picture here. My data have 50+ groups but it is hard to differentiate the colours and labelling them manually. May I know if there are tips to this?
it's a lot! you don't need to use this classification you can for example use the antismash one, you can change the colors manually! Personally, I didn't add the groups I had a table of annotation with all the details of each gene "size, function ...) you can consult my article is available in preprint (it is being published)! “https://www.biorxiv.org/content/10.1101/2021.12.21.473593v1.full” I added these details to the legend; Figure 5. Comparison between Cluster 2 of Streptomyces sp. RO-S4, the Grincamycin Gene Cluster of Streptomyces lusitanus SCSIO LR32, and the BGC of Grincamycin-producing Streptomyces sp. CNZ-748. Gene neighborhoods representative of the compared BGCs are shown aligned with an arbitrary color scheme using clinker to highlight the conserved genes. The arrow’s colors represent the gene clusters identified by Clinker, which encode similar proteins. The lines linking the arrows show gene-encoding proteins that share more than 80% sequence identity. Missing genes in RO-S4 compared to LR-32 were circled in red.
you'll have less groups
Alright, thank you so much!