Question

Where can I find single cell genome sequencing?

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2.5 years ago

d • 0

I am interested to know if there is a repository of only single cell genomic sequencing as open source or for students research (phd/bachelor's) Thank you

dna single-cell-sequencing • 1.1k views

ADD COMMENT • link 2.4 years ago by d • 0

score 2 · Accepted Answer · 2022-06-13

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2.5 years ago

lieven.sterck 15k

Single cell data is in essence not much different from 'normal' RNAseq. You can thus find them in the same sort of repositories: ENA, SRA, ...

You will need to specify when querying them that you are looking for scRNAseq.

EDIT: this might not all be completely relevant in the case of genome single cell data

ADD COMMENT • link 2.5 years ago by lieven.sterck 15k

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Is OP looking for sc DNA seq? (as opposed to scRNAseq)

ADD REPLY • link 2.5 years ago by Ram 44k

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genomic word in the question certainly seems to imply so.

https://www.ncbi.nlm.nih.gov/sra/?term=SAMN14945175 has sequence data from single human cells from this paper https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02406-y

ADD REPLY • link 2.5 years ago by GenoMax 147k

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right, I missed that ....

ADD REPLY • link 2.5 years ago by lieven.sterck 15k

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Thank you very much to everyone!

ADD REPLY • link 2.4 years ago by d • 0