Question

what is bam format file flag 0x2 mean?

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3.3 years ago

Tao ▴ 40

enter image description here

I find the sam PDF,and want to understand flag 0x2,but I can not understand. where have some detailed instructions for it ?

bam flag sam • 1.8k views

ADD COMMENT • link updated 2.5 years ago by Wang Cong ▴ 10 • written 3.3 years ago by Tao ▴ 40

score 2 · Answer 1 · 2021-09-23

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3.3 years ago

Pierre Lindenbaum 164k

in a paired end, both fragments are mapped on the same contig, anti-parallel to the other, at a good distance.

ADD COMMENT • link 3.3 years ago by Pierre Lindenbaum 164k

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Thanks a million.

ADD REPLY • link 3.3 years ago by Tao ▴ 40

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For Hi-C reads which two parts of the read could be separated far apart, will it be labelled as "properly paired"?

ADD REPLY • link 2.5 years ago by Wang Cong ▴ 10