Bedtools Getfasta in snakemake

Question

[Fadwa]

Hi,

I have multiples files containing Ids of genes and genome sequences in another file and I would like to extract nucleotide sequences, only when the name of files match using snakmke, it does his job, but it generates empty files that I want to drop.

Can you help me

Thank you

[Pierre Lindenbaum]

what's your downstream analysis (after getfasta) ?

[Fadwa]

I have nothing to run after this rule.