Phylogenetic tree

Question

[SK007]

I have never produced phylogenetic trees. I have binned and annotated my assembled files. Can you suggest easy and good ways to produce phylogenetic trees for bacterial community? Thank you

Answer 1

[Mensur Dlakic]

This is not a trivial subject, and I suggest you invest some time studying how others have done it in similar setup to yours. It is not necessarily a good idea to stick to a defined pipeline as most metagenomic datasets are unique, and require customized context of related groups to be properly appreciated.

That said, this will get you going:

https://github.com/AstrobioMike/GToTree