how to Find genome coordinates of all the chromosomes of nucleotide sequence ,mainly DNA-seq data

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2.5 years ago

raushnichoudhary • 0

I have DNA-seq data of lung tissue in .fa format, i need to know the coordinates of each chromosomes, in bed format(final result). please help me in this... Thanks in advance..

DNA-seq dats cordinates of • 1.0k views

ADD COMMENT • link 2.5 years ago by raushnichoudhary • 0

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You need to know the location on the chromosomes where those DNAseq reads are derived from?

If so, align them to the chromosomes sequences and parse out the coordinates.

ADD REPLY • link 2.5 years ago by lieven.sterck 15k

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like there are command through which we can Find genome coordinates of nucleotide sequence within specific gene, similarly can we do in whole genome?

ADD REPLY • link 2.5 years ago by raushnichoudhary • 0

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yes there are.

It's usually appreciated if you show that you have put al least some effort in resolving this yourself.

Did you search for tools that can do alignment of sequences against chromosomes?

ADD REPLY • link 2.5 years ago by lieven.sterck 15k

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No, i did not search for tools..

ADD REPLY • link 2.5 years ago by raushnichoudhary • 0

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Please guide me through this, i have no idea how to implement this, i am new in this field.

ADD REPLY • link 2.5 years ago by raushnichoudhary • 0

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