Bioinformatic analysis of small RNA sequencing data

Question

[mahla.krishan]

I have high thorough small RNA sequenced data based on ILLUMINA TruSeq. I want to analyse and profiling of Small noncoding RNAs (sRNA/sncRNAs) like**profiling microRNAss, piRNAs, tRNAs, small nuclear RNAs, small nucleolar RNAs and rRNAs and discovering isomiRs, tRFs and phasiRNAs. Please suggest suitable tools and pipeline for the same.

[Matthias Zepper]

nf-core smrnaseq. Since the website is sometimes slow, see the Github repo if it doesn't load.