Is it normal that my amplicon sequence variants (ASVs) have gaps ?
0
0
Entering edit mode
2.4 years ago

Hello my chief sent me some working files to perform a functional analysis from amplicon sequences. (from 16S rRNA genes)

This is the first time that I perform an analysis from amplicon sequences so I want to know if from the DADA2 pipeline it is normal to output a fasta file with ASVs with gaps inbetween the sequences like this:

fasta example

Thanks for your time :)

ASVs DADA2 fasta • 408 views
ADD COMMENT

Login before adding your answer.

Traffic: 1748 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6