Plink (1.07 and 1.09) runs and stops after reading map

Question

[davidenoma]

I am experiencing challenges running

 plink --bfile Ghana_Prostate_1 --missing --noweb

The command starts running and stops abruptly after giving the output

Reading map (extended format) from [ Ghana_Prostate_1.bim ]

I have checked the log files and it gives me the same error. It gives the output for a few seconds. It runs fine on the test data provided with plink. Any ideas?

[PKW]

Do you have the file .imiss in your working directory?

[chrchang523]

That output is only produced by plink 1.07. Your question implies that you have run with plink 1.90, but you haven't posted the different .log output it produces; please post its full .log/console output. (You can run with the --debug flag to force each .log line to be written to disk immediately.)