NGS reads calculation

0

Entering edit mode

2.3 years ago

anasjamshed ▴ 140

I have paired-end reads data of NGS in 2 fastq files that are: father_R1.fq.gz and father_R2.fq.gz

How can I find how many reads are included in these two fastq files and their read length respectively through Galaxy?

Is there any specific tool for it?

Galaxy • 1.0k views

ADD COMMENT • link updated 23 months ago by Ram 44k • written 2.3 years ago by anasjamshed ▴ 140

0

Entering edit mode

How can I find how many reads are included in these two fastq files and their read length respectively through Galaxy?

what did you find so far ?

ADD REPLY • link 2.3 years ago by Pierre Lindenbaum 164k

0

Entering edit mode

I tried FASTQ info in galaxy

ADD REPLY • link 2.3 years ago by anasjamshed ▴ 140

0

Entering edit mode

Ask Galaxy specific questions on their help forum for prompt response: https://help.galaxyproject.org/

ADD REPLY • link 2.3 years ago by GenoMax 147k

0

Entering edit mode

I am asking about specific tool

ADD REPLY • link 2.3 years ago by anasjamshed ▴ 140

0

Entering edit mode

FastQC will give you those data, along with a lot of other useful quality control info https://galaxy-au-training.github.io/tutorials/modules/fastqc/

ADD REPLY • link 2.3 years ago by mark.ziemann ★ 1.9k

Login before adding your answer.