RNA-seq vs scRNA seq comparison

Question

[abhay.kanodia]

Hello,

I performed bulk RNA-seq and single cell RNA sequencing on the same samples. Is there a way to find common Differentially Expressed Genes (DEGs) from both these techniques? Thank you!

[Basti]

Could you elaborate a bit more your question ? Have you performed different analyses and now you want to intersect the results ?

[abhay.kanodia]

Hello Basti,

Thanks a lot for your response. I have one single cell line; MCF10A. I performed bulk RNA seq on certain knockouts of this cell line and another colleague in the lab had performed single cell RNA sequencing. No we want to compare the DEGs between both these methods.