Question

detection of DNA transpsosons

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2.4 years ago

manaswiniparija3 ▴ 50

can any one suggest a good pipeline to detect DNA transposons in a assembled Genome ??

DNA transposons • 1.1k views

ADD COMMENT • link 2.4 years ago by manaswiniparija3 ▴ 50

score 2 · Answer 1 · 2022-07-13

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2.4 years ago

Juke34 8.9k

EDTA => https://github.com/oushujun/EDTA

ADD COMMENT • link 2.4 years ago by Juke34 8.9k

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Thank You

ADD REPLY • link 2.4 years ago by manaswiniparija3 ▴ 50

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Dear Sir I was installing EDTA through conda and mamba but encountering an issue " nothing provides blast needed by edta-1.7.7-0" during installation. can you please Guide me how to solve this issue. I am attaching a screen shot of the issue kindly look have a look. enter image description here

ADD REPLY • link 2.4 years ago by manaswiniparija3 ▴ 50

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Try with older python version e.g. python 3.7. You can open an issue in the github repo

ADD REPLY • link 2.4 years ago by Juke34 8.9k

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Thank You Sir for your help. now its working.

ADD REPLY • link 2.4 years ago by manaswiniparija3 ▴ 50