Error in DiffBind

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2.4 years ago

Scabbards • 0

Hi, I have error said

Error in if (sum(res$peaks[1]$Score < 0) > 0) { : missing value where TRUE/FALSE needed In addition: There were 17 warnings (use warnings() to see them)

enter image description here

here is my sample file enter image description here

here are my peaks enter image description here

I think it can find my peaks, then what's wrong with it?

R DiffBind • 957 views

ADD COMMENT • link 2.4 years ago by Scabbards • 0

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I would suggest you write the full path to your files.

ADD REPLY • link 2.4 years ago by Marco Pannone ▴ 810

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Thank you! I've tried full path, also from this test I think the program can find my file. enter image description here So I think it may not be the file path problem. Something wrong with my broadPeak.bed file?

ADD REPLY • link 2.4 years ago by Scabbards • 0

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In addition to the full paths suggestion, I've seen similar errors when a peaks file contains no actual peaks, so I'd ensure those files actually have peaks.

ADD REPLY • link 2.4 years ago by jared.andrews07 ★ 18k

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Yes you are right! Thank you very much! I've already solved my problem!

ADD REPLY • link 2.4 years ago by Scabbards • 0

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