Entering edit mode
2.4 years ago
Mehwish
•
0
I have to find the orthologs of 794 biofilm genes (that a0re taken from different bacteria) in bacillus subtilis subsp str 168 genome and in staphylococcus aureus UAMS-1, both seperately... keeping in mind e-value of 10^-5... so using the same 794 biofilm genes, it will give me a set of orthologous genes in bacillus subtilis and another set of orthologous genes in staphylococcus aureus... separately so for that I have to run BLAST for each of the 794 genes and it will consume a lot of my time... so is there a shortcut of doing this? or do I have to individually BLAST all of these?
No, just use the command line interface to download. There are also numerous tools 3rd party tools available, e.g. the R package OrthoGene or the Python software JustOrthologs.