which SRR must be used from a SRP
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2.4 years ago
amahdi779 • 0

after finding a suitable dataset when i want to download a dataset from GEO, after clicking on SRP link and after going to SRZ i encounter with several SRR and question arises for me, which one of SRR must be downloaded?

SRR SRP SRZ GEO • 823 views
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Possibly all of them - unless you wish to skip particular samples or experiments from the study. Take a look at ffq or nf-core fetchngs to simplify the download process.

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thnak you for your answer but what we must do when we want to analysis these data?

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Once you downloaded the runs, you have reads in FastQ format. Downstream processing varies according to sequencing technology, experiment type and your scientific interest.

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