My tutor asked me to "add to the results the normalized counts (function merge) try match + index" (DESeq2 and GSEA)

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2.4 years ago

shaozhiting • 0

I'm sorry for this stupid question, for which I have disturbed my tutor several times but I still can't fully understand her requistion well.

My aim is to create my own GMT file and check it.

First, I created my GMT file with interested gene lists.
Next step, she asked me to "add to the results the normalized counts (function merge) try match + index".
Then I will use the results above to check the data sets.

Here is the question about step 2, which nearly drives me mad: what does it mean? I thought, I need to use the normalized counts to run GSEA - am I right? But how to understand "add to the results the normalized counts"?

Thank you very much for your kind help!!

DESeq2 GSEA Counts Normalized • 689 views

ADD COMMENT • link 2.4 years ago by shaozhiting • 0

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Sorry, not the answer you will want, but you should really go back to them and ask them to clarify. We don't know what they meant and risk giving you incorrect advise for your work.

ADD REPLY • link 2.4 years ago by 4galaxy77 2.9k

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Thank you so much. I will now carefully write to my tutor for more information.

ADD REPLY • link 2.4 years ago by shaozhiting • 0

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