Entering edit mode
2.4 years ago
I have trimmed reads of the whole genome of a novel fungal species. I want to upload it in kraken in galaxy server for identification. But I am unable to find a database suitable for fungus in kraken. The only options that appear are Plasmids, Bacteria and Virus. Can someone please help with this? Thank you!
Don't waste your time with this. Go ahead with the genome assembly instead, and use the genome to determine if your fungal isolate is a new species or not
Fine thank you!