I know that when there is a trait that is polygenic and show lots of signal that genomic control is not as interpretable (and confounding is better investigated with LD score regression), but what I am trying to understand is if genomic control is interpretable in the opposite case when there are not anygenome-wide significant hits.
For example say you do a GWAS for broken leg and get no hits with p < 5e-8, but calculate genomic control and find it is 1.4, is this interpretable as something confounding is inflating test statistic even when there are not hits? Based on this excerpt below I would think yes, but would like to check my understanding.
Thanks