non autonomous transposable elements

Question

[manaswiniparija3]

I want to detect the distribution of different type of non autonomous transposons . detect and annotate deletion and non deletion derivative of autonomous transposable elements. can any one suggest any specific pipelines or tools related to this.

Answer 1

[Juke34]

With EDTA you get a GFF as output. If you anntote different genome you can then perform some comparative analysis.

[manaswiniparija3]

Ok, Sir, I will try that. and I had another doubt. can I identify the nondeletion derivative of autonomous transposons through this?