Entering edit mode
2.4 years ago
Jaykumar
▴
50
Hello everyone, I have analyzed a few genomes and constructed a phylogeny tree using the codon tree method (available on the PATRIC server). This method draws the phylogenetic tree based on the alignment score of the common PGFams' nucleotide and amino acid sequences using RAxML. I am not able to perform MSA-based phylogeny due to computational limitations. Now, I was wondering whether the method I used for drawing phylogenetic trees is acceptable for publication? Does it have any drawbacks? (I mean of course no method is perfect but still...) I am kinda new to this and I don't know how to figure this out. Please help.
