Entering edit mode
2.4 years ago
Rijan
▴
30
I have list of 105 species and their genomes. I want to make a species tree out of this data and want to run IQTree2) but am a little confused about one of the steps. What do I do if I end up with zero homologous groups with single copies only? I ran clustering on the data with OrthoFinder and have some 20k homologous groups but none with single copies only.
Can I take a homologous group with all species present and select one para-log per species randomly? or this completely wrong?
