how can I merge or put together the different genomic dataset?

Question

[ssko]

Hello to everyone!

I pulled raw data from SRA which consists of 7 different bioproject datasets. All are metagenomic data. Some are 16S rRNA sequence, some are whole genome sequence.

I analyzed all the raw data separately according to the bioproject information such as the instrument used etc.

I will then build a machine learning model using this analyzed data. But my problem is how can I merge or put together these different datasets before model building?

Can you help me on how to proceed?

Thank you Seda

[Ernest Bonat]

one simple solution of this problem is to using python pandas library. here are two main steps:

1. open each file and create a dataframe with the selected columns name
2. merge these dataframes (Merge, join, concatenate and compare)

i got all this python code already running. let me know if you need my help?

[ssko]

Ernest Bonat, Ph.D. Thank you very much! This is exactly the information I need.