Plot splicing summary using ggbio

Question

[tien]

Hello all,

I'm trying to draw a splicing plot which is quite similar to sashimi plot using ggbio.

I know how to use pysashimi and ggsashimi in python, but I want something more adjustable (like adding free text to image) so I come up with ggbio. However, when using plotSpliceSum(), I can only produce the last chart in the above image. Can someone explain to me how to draw like attached image?

Thanks for your help.

[Matthias Zepper]

I can't answer your question for ggbio, but I have done a similar plot for my thesis in R with the Gviz package and the Alignment track. To display the enhancer interactions, I had to generate fake reads to span the cis-regulatory elements and promoters, but in your case you should be able to directly plot your .bam file with Gviz.

[tien]

Thanks for your help. I will try with Gviz