Entering edit mode
2.5 years ago
c.eskiw
▴
10
Good day all,
Probably a simple fix but I am getting a key error in my Liftoff runs. Not sure how to handle this. Any insight welcome. The command I am using is as follows:
liftoff target /mnt/f/Genomes/Yeast31_AssembledGenome/contigs.fasta -g /mnt/f/yeastGenomes/Yeast_S288CRefGenome/saccharomyces_cerevisiae.20220727.gff -o /mnt/f/yeastGenomes/Yeast31_AssembledGenome/yeast31.gff3
The error is as follows:
KeyError: 'chrI'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/ceskiw/miniconda3/bin/liftoff", line 8, in <module>
sys.exit(main())
File "/home/ceskiw/miniconda3/lib/python3.9/site-packages/liftoff/run_liftoff.py", line 12, in main
run_all_liftoff_steps(args)
Cheers! Chris
