Entering edit mode
2.8 years ago
heureuse
▴
10
Hello,
I'm learning how to use PennCNV-Seq (pipeline for variant calling). I've already installed the dependencies (bedtools and pennCNV).
I have to execute the command below but I don't understand it and I can't find a relevant tutorial online. I have the bam file and I know that the fasta file is the reference. However, If I could have a link to download files for simulation it would be great.
This is the command line:
./penncnv-seq_example.sh [penncnv_dir] [penncnv_ref_dir] [genome_version] [population] [reference.fasta] [bam_file]
Thank you
