pathway analysis of cell clusters in single-cell RNA-sequencing data

Question

[kgiannikou]

Hello,

Which tool would you suggest for pathway analysis of cell clusters in single-cell RNA-sequencing data?

Has anyone used ReactomeGSA package or scTPA (http://sctpa.bio-data.cn/sctpa)?

Thank you

[jv]

I haven't used those specific packages but you might also want to look at GSVA https://www.bioconductor.org/packages/release/bioc/html/GSVA.html