QTL scores values to predixcan/Fusion format

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2.3 years ago

fernandogs97 ▴ 30

Hello, I am starting in the xWAS (PWAS, TWAS, MWAS) field, at first I have only been using the models published by predictdb (https://predictdb.org/) on my patients summary data with predixcan (https://github.com/hakyimlab/PrediXcan). Despite this, I am trying to use more available information, for this purpose, I want to use QTL score information (for example: https://www.omicspred.org) to create models in the predixcan format so I can apply them to my data. The main problem is that I do not find information about how to use the QTL score information published by multiple authors. I would be very grateful if someone could give me some advice on this area

TWAS PWAS QTL PREDIXCAN GWAS • 715 views

ADD COMMENT • link 2.3 years ago by fernandogs97 ▴ 30

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You can get support from PrediXcan's devs group. Check this out https://groups.google.com/g/predixcanmetaxcan.

ADD REPLY • link 2.3 years ago by Helix ▴ 20

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Thank you, I have already posted my question, either way I'll keep this post open in case someone shares its experience with me.

ADD REPLY • link 2.3 years ago by fernandogs97 ▴ 30

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