Plink error

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2.3 years ago

Rafael • 0

Hi everyone! I have a trouble: I made my .ped file and when I gonna do the quality control, show me a error message "Your file.ped fewer tokens than expected". Does anyone know what I can do, please?

PLINK quality-control • 814 views

ADD COMMENT • link updated 2.2 years ago by Ram 44k • written 2.3 years ago by Rafael • 0

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what does your .ped file look like? it may be a formatting issue. usually that error is triggered by not having a space/tab-delimited text file

ADD REPLY • link 2.3 years ago by pabe ▴ 30

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Thanks for your answer, but I tryed to make my .ped file with this delimitations, and the same error is showing: Error: Line 1 of .ped file has fewer tokens than expected. My .ped file is liked with that: FAM 100026 0 0 1 -9 A B A A A B B B A B A A A B A B A A A A A B B B... FAM is the population that I'm using, followed by individue ID, dam, sire, sex (1 to male) and phenotype (-9, because I'm not studying with any phenotypic traits).

ADD REPLY • link 2.3 years ago by Rafael • 0

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