Entering edit mode
2.3 years ago
Zahra
▴
110
I have downloaded the miRNA-Seq data from TCGA by filter below:
query <- GDCquery(project = "TCGA-ESCA" ,
data.category = "Transcriptome Profiling" ,
data.type = "miRNA Expression Quantification",
workflow.type = "BCGSC miRNA Profiling",
experimental.strategy = "miRNA-Seq")
And here is a part of my data:
hsa-mir-155 1137 719 1011 1212 3369 1043
hsa-mir-1587 0 0 0 0 0 0
hsa-mir-15a 1046 1157 668 421 1033 868
hsa-mir-15b 2117 1820 1118 523 1302 3217
hsa-mir-16-1 967 1088 766 403 1645 1423
hsa-mir-16-2 938 1080 821 408 1686 1445
hsa-mir-17 6790 6343 6359 2360 7260 5731
hsa-mir-181a-1 2357 12430 4323 1142 3991 2892
hsa-mir-181a-2 2703 11793 10507 1599 5680 7678
hsa-mir-181b-1 658 3857 855 208 883 658
Now I don't know which type of miRNA are they. mature miR or pre-miR or both or unknown.
Thanks for any help.