Entering edit mode
2.2 years ago
magnolia
▴
30
Hi,
I installed pysam via pip and am using bcftools in python without a problem. But I just can't run bcftools plugins. I get the error below:
How I run
bcftools.plugin('counts', filepath)
The error I get
pysam.utils.SamtoolsError: "bcftools returned with error 1: stdout=, stderr=[E::bcftools_main] unrecognized command 'plugin'\n"
Does anyone have an idea how to make it work?
Thanks in advance!