Question

How To Convert The Bed File To Ped File

16

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14.3 years ago

Austinlew ▴ 310

I have got a BED file (used in Plink and with .bim and .fam file) which contains Affy 500K data, I want to convert it back to PED file with map file. Is there anyone how to do this task? Thank you very much !

bed ped • 48k views

ADD COMMENT • link updated 2.2 years ago by sonsunjirachote • 0 • written 14.3 years ago by Austinlew ▴ 310

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Thanks a lot , I will try it right now!

ADD REPLY • link updated 14.3 years ago by Istvan Albert 102k • written 14.3 years ago by Austinlew ▴ 310

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For future reference, best to reply with thanks in the comments, not as an additional answer to a question :)

ADD REPLY • link 14.3 years ago by User 59 13k

Ram · Accepted Answer · 2010-08-27

33

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14.3 years ago

jvijai ★ 1.2k

plink --bfile filename --recode --tab --out myfavpedfile

plink

ADD COMMENT • link updated 5.3 years ago by Ram 44k • written 14.3 years ago by jvijai ★ 1.2k

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I got an error which shown as Error: --export requires at least one output format. (Did you forget 'ped' or'vcf'?)

So I added export parameter ./plink2 --bfile filename --recode --tab --out myfavpedfile --export ped but also got the error Error: Duplicate --export flag.

Do you got any solution for this stiuation?

Thank you

JK

ADD REPLY • link 2.2 years ago by sonsunjirachote • 0