How to get gene expression data from list of gene

Question

[m610110001]

Hello,

I have the gene of the list of whole exome sequencing data from the paper. Can I use this list of genes to get the gene expression data? Should I download the transcriptomic data using this list of genes? How do I do that process? Also, can I get SNVs and CNVs data from those gene lists?

Thank you

Answer 1

[mark.ziemann]

Exome sequencing is a different assay from RNA sequencing. These are generated from different experiments. Did this paper indicate they conducted both exome seq and RNA-seq experiments?

For your last question, you can use exome seq to call SNV and CNVs although you require specific programs to conduct those analyses.

[m610110001]

Hello, thank you for your answer. I got the annotation from the exome from this paper "Genetic alterations and their therapeutic implications in epithelial ovarian cancer" https://doi.org/10.1186/s12885-021-08233-5

I don't have any Idea how to know CNVs data from those annotation files I got from the paper. Is there any public dataset that I can access for CNVs data?