Augustus installation error message
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0
Entering edit mode
2.2 years ago
Shin Taguchi ▴ 40

Hi, all.

I am facing a problem when installing AUGUSTUS on Ubuntu(18.04.6). I have executed the following command:

wget http://bioinf.uni-greifswald.de/augustus/binaries/augustus.current.tar.gz
tar -xzf augustus.current.tar.gz
cd augustus-3.4.0
make

And I was given this error message.

mkdir -p bin
cd src && make
make[1]: Entering directory '/home/taguchi/analysistools/augustus-3.4.0/src' 
g++ -c -DZIPINPUT -DCOMPGENEPRED -DTESTING -DM_MYSQL -DM_SQLITE -Wall -Wno-sign-compare -pedantic -O3 -std=c++11  -o genbank.o genbank.cc -I../include -I/usr/include/lpsolve -I/usr/include/mysql -I/usr/include/mysql++
In file included from ../include/genbank.hh:12:0,
                 from genbank.cc:10:
../include/types.hh:16:10: fatal error: boost/archive/text_oarchive.hpp: Nosuc file or directry
 #include <boost/archive/text_oarchive.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
Makefile:76: recipe for target 'genbank.o' failed
make[1]: *** [genbank.o] Error 1
make[1]: Leaving directory '/home/taguchi/analysistools/augustus-3.4.0/src' 
Makefile:7: recipe for target 'all' failed
make: *** [all] Error 2

How can I solve this error message?

gene installation prediction augustus • 1.1k views
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Entering edit mode
2.2 years ago

The error is triggered by:

/include/types.hh:16:10: fatal error: boost/archive/text_oarchive.hpp: Nosuc file or directry

Here is how you fix it: link

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Entering edit mode

@andres.firrincieli

Thank you for your advice! It worked out well.

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