Entering edit mode
2.2 years ago
German.M.Demidov
★
2.9k
Hi community,
I have a quick question I don't know whom to ask:
1) a tool for PRS computation https://github.com/getian107/PRScs wants GWAS size to be specified ( GWAS_SAMPLE_SIZE )
2) I use a COVID GWAS for this, https://www.covid19hg.org/results/r7/ . The total number of cases plus the total number of controls is around 1M. But there is also a field:
all_inv_var_meta_effective effective sample size
which is around 5000.
What PRSce wants from me, 1M or 5000?
Thanks!
