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2.2 years ago
magnolia
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30
Hi,
As far as I understand, in PAR regions, a SNP can be on X or Y. For example rs700455. It's shown on chromosome Y on dbSNP, and shown on chromosome X on Ensembl. In dbSNP VCF, it's shown in both X and Y.
If all information we have is that genotype in rs700455 is TC, how can we represent this in a VCF? Show on both X and Y?
Thanks a lot!