CNA calling in mouse tumor-normal WGS

Question

[German.M.Demidov]

Hi community,

do you know a tool for CNA detection in tumors for 30x WGS tumor-normal mouse data?

There is no cohort, so only for one pair of tumor/normal...

Thanks a lot!

Answer 1

[dariober]

There should be quite a few... Shameless plug, I wrote mine a while ago, cnv_facets

[German.M.Demidov]

I actually like FACETS - but I though it is for WES and for humans =) will check it out! thanks!