Entering edit mode
2.2 years ago
2795462813
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PRSice: Error in getopt(spec = spec, opt = args) : long flag "cov" is ambiguous
PRSice: Error in getopt(spec = spec, opt = args) : long flag "pheno" is ambiguous
The command is
Rscript PRSice.R \
--prsice PRSice_linux \
--base Height.QC.gz \
--target EUR.QC \
--binary-target F \
--pheno EUR.height \
--cov EUR.covariate \
--base-maf MAF:0.01 \
--base-info INFO:0.8 \
--stat OR \
--or \
--out EUR
the pheno file is like this
the cov file is like this