Entering edit mode
2.2 years ago
melissachua90
▴
70
I've generated a tsv file of gene regulatory network inference using the GrnBoost2 algorithm (https://arboreto.readthedocs.io/en/latest/). The file has regulatory links in a pandas dataframe format ['TF', 'target', 'importance'].
What is the appropriate software to visualize the data?
I've considered pySCENIC, but its visualization is built for single-cell data. I've also considered Cytoscape, but it does not accept my output format.