Is there a tutorial/ demo on single cell nuclei-seq analysis
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2.2 years ago
Emily ▴ 70

Is there a tutorial/demo on single cell nuclei-seq (snRNA-seq or sNuc-seq) downstream analysis? I see lots of scRNA-seq when trying to google it but not much on snRNA-seq... I assume it's not too different from scRNA-seq analysis but was wondering what couple flags I should change to analyze. The data I'm trying to analyze is 10x pbmc data.

Any help is much appreciated, thank you.
cell seq single sNuc-seq nuclei-seq sn-RNA • 817 views
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Some help here : http://bioconductor.org/books/3.14/OSCA.advanced/single-nuclei-rna-seq-processing.html

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Is there a python version or currently only available in R?

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