Entering edit mode
2.6 years ago
Jeremy
▴
930
I've been following the guidelines in "RNA-seq by Example" in order to practice analyzing RNA-seq data, but when I try to run the edger.r or deseq2.r code as follows:
Rscript code/deseq2.r
I get the following error:
Error in file(file, "rt") : cannot open the connection
Calls: read.csv -> read.table -> file
In addition: Warning message:
In file(file, "rt") :
cannot open file 'design.csv': No such file or directory
Execution halted
It seems that I'm missing a file called design.csv. Does anyone know what I'm doing wrong or where I can find the design.csv file?
Got it. I missed that update. Thanks a lot!