How can I give dbscsv11.txt.gz and dbscsv11.txt.gz.tbi to tableannovar --protocol instead of dbscsv11.txt and dbscsv11.txt.tbi?
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2.1 years ago
pragnapcu ▴ 10

I want to pass zipped database files to tableannovar command instead of txt. Here is my command

perl table_annovar.pl sample.avinput AnnovarDb -buildver hg38 -out \ sample -remove -otherinfo -protocol dbscsnv11.txt.gz -operation f \ -nastring . -polish -xref gene_fullxref.txt

I understand this is the way but not able to figure out. Can someone please help me out

dbscsnv GATK Annovar • 600 views
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