gvcf to bam or fastq

Question

[OMG_HG]

Hello,

I have a gvcf file, it was made using gatk4 HaplotypeCaller -ERC option.

I did not genotype any filter in this gvcf file.

Is it possible to get bam or fastq file from gvcf file?

Thanks in advance!

[Pierre Lindenbaum]

Is it possible to get bam or fastq file from gvcf file?

sounds like "Can I get a cow from a steack ?"

[OMG_HG]

Thank you for your answer. I understand that it is impossible if your posting is appropriate.

[OMG_HG]

More details, I made gvcf file in the following step.

using sort bam file as a input -> gatk4 Baserecalibration -> gatk4 ApplyBQSR -> gatk4 HalotypeCaller -ERC GVCF -> gvcf file

thanks,

[nhaus]

What do you want to do with the BAM file that you would get from the "gvcf -> BAM conversion"? I mean you are using a BAM file as the input of the whole pipeline. Cant you use that one to do whatever you want to do?

[OMG_HG]

I wanted to make a bam file for using another varinat call tools.