Benchmark data for variant calling assessment
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2.1 years ago
ashenflower ▴ 30

Hello,

I would like to assess a new method that I am trying to implement for performing variant calling, in particular for large structural variants (so, not only SNPs), but I would need some kind of "ground trurth". It would be incredibly useful if any of you could point me to a reference genome for which there is another one with annotated variants SVs, or to a good variants simulator. Even if you could just tell me how to look for such data would be great.

Thank you in advance! :)

genomes variants benchmark calling structural • 718 views
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Hi! Thank you for your comment, this is surely useful, I'll take a closer look

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